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1

De novo structure generation using chemical shifts for proteins with high-sequence identity but different folds

Yang Shen, Philip N. Bryan, Yanan He, John Orban, David Baker, Ad Bax

Journal:

Protein Science

Year:

2010

Language:

english

File:

PDF, 638 KB

english, 2010

2

Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology

Yang Shen, Ad Bax

Journal:

Journal of Biomolecular NMR

Year:

2007

Language:

english

File:

PDF, 532 KB

english, 2007

3

De novo protein structure generation from incomplete chemical shift assignments

Yang Shen, Robert Vernon, David Baker, Ad Bax

Journal:

Journal of Biomolecular NMR

Year:

2009

Language:

english

File:

PDF, 808 KB

english, 2009

4

TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts

Yang Shen, Frank Delaglio, Gabriel Cornilescu, Ad Bax

Journal:

Journal of Biomolecular NMR

Year:

2009

Language:

english

File:

PDF, 439 KB

english, 2009

5

Prediction of Xaa-Pro peptide bond conformation from sequence and chemical shifts

Yang Shen, Ad Bax

Journal:

Journal of Biomolecular NMR

Year:

2010

Language:

english

File:

PDF, 393 KB

english, 2010

6

SPARTA+: a modest improvement in empirical NMR chemical shift prediction by means of an artificial neural network

Yang Shen, Ad Bax

Journal:

Journal of Biomolecular NMR

Year:

2010

Language:

english

File:

PDF, 477 KB

english, 2010

7

Identification of helix capping and β-turn motifs from NMR chemical shifts

Yang Shen, Ad Bax

Journal:

Journal of Biomolecular NMR

Year:

2012

Language:

english

File:

PDF, 1.20 MB

english, 2012

8

Protein backbone and sidechain torsion angles predicted from NMR chemical shifts using artificial neural networks

Yang Shen, Ad Bax

Journal:

Journal of Biomolecular NMR

Year:

2013

Language:

english

File:

PDF, 786 KB

english, 2013

9

Alpha-Synuclein, an Intrinsically Unstructured Protein. How Interesting Can It Be?

Maltsev, Alexander, Ying, Jinfa, Shen, Yang, Bax, Ad

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 34 KB

english, 2013

10

A maximum entropy approach to the study of residue-specific backbone angle distributions in α-synuclein, an intrinsically disordered protein

Mantsyzov, Alexey B., Maltsev, Alexander S., Ying, Jinfa, Shen, Yang, Hummer, Gerhard, Bax, Ad

Journal:

Protein Science

Year:

2014

Language:

english

File:

PDF, 679 KB

english, 2014

11

Homology modeling of larger proteins guided by chemical shifts

Shen, Yang, Bax, Ad

Journal:

Year:

2015

Language:

english

File:

PDF, 1.26 MB

english, 2015

12

MERA: a webserver for evaluating backbone torsion angle distributions in dynamic and disordered proteins from NMR data

Mantsyzov, Alexey B., Shen, Yang, Lee, Jung Ho, Hummer, Gerhard, Bax, Ad

Journal:

Journal of Biomolecular NMR

Year:

2015

Language:

english

File:

PDF, 1.57 MB

english, 2015

13

Monomeric Aβ 1–40 and Aβ 1–42 Peptides in Solution Adopt Very Similar Ramachandran Map Distributions That Closely Resemble Random Coil

Roche, Julien, Shen, Yang, Lee, Jung Ho, Ying, Jinfa, Bax, Ad

Journal:

Year:

2016

Language:

english

File:

PDF, 2.78 MB

english, 2016

14

ARTSY-J: Convenient and precise measurement of 3JHNHα couplings in medium-size proteins from TROSY-HSQC spectra

Roche, Julien, Ying, Jinfa, Shen, Yang, Torchia, Dennis A., Bax, Ad

Journal:

Journal of Magnetic Resonance

Year:

2016

Language:

english

File:

PDF, 1.50 MB

english, 2016

15

Prediction of nearest neighbor effects on backbone torsion angles and NMR scalar coupling constants in disordered proteins

Shen, Yang, Roche, Julien, Grishaev, Alexander, Bax, Ad

Journal:

Protein Science

Year:

2017

Language:

english

File:

PDF, 1.17 MB

english, 2017